Index

_

__next__() (trajectory.Trajectory method) _generate_chopping() (segmentation.geostas.Parser method) _group_in_threes() (normal_modes.NormalModes method)

_read_csv_rows() (in module segmentation.chainsaw) (in module segmentation.merizo) _translate_atoms_to_residues() (segmentation.geostas.Parser method) _validate_modes() (normal_modes.NormalModes method)

A

atomnames (normal_modes.NormalModes attribute)

B

batched() (in module util)

C

coordinates (normal_modes.NormalModes attribute) (trajectory.Trajectory property)

F

frames (trajectory.Trajectory property) from_ca_frames() (trajectory.Trajectory static method)

from_nmd() (normal_modes.NormalModes static method) from_paths() (trajectory.Trajectory static method)

G

generate_nmd_from_pdb() (in module normal_modes)

generate_trajectory() (normal_modes.NormalModes method)

M

mda_universe (trajectory.Trajectory attribute) modes (normal_modes.NormalModes attribute) module normal_modes segmentation segmentation.chainsaw segmentation.geostas segmentation.merizo trajectory util

N

normal_modes module

NormalModes (class in normal_modes)

P

parse() (segmentation.chainsaw.Parser method) (segmentation.geostas.Parser method) (segmentation.merizo.Parser method) (segmentation.SegmentationParser method) parse_nmd_file() (normal_modes.NormalModes method)

Parser (class in segmentation.chainsaw) (class in segmentation.geostas) (class in segmentation.merizo) ParsingError paths (segmentation.SegmentationParser attribute)

R

resids (normal_modes.NormalModes attribute)

resnames (normal_modes.NormalModes attribute)

S

segmentation module segmentation.chainsaw module segmentation.geostas module

segmentation.merizo module SegmentationParser (class in segmentation) select_atoms() (trajectory.Trajectory method)

T

trajectory module

Trajectory (class in trajectory)

U

util module

V

ValidationError

W

write_frames() (trajectory.Trajectory method)

write_segmentations() (in module segmentation) write_static() (trajectory.Trajectory method)