Protein Runway¶

Protein Runway is a tool for the schematic visualization of large molecules’ most important movements based on computational analysis. It consists of:

  • A snakemake pipeline that takes a topology and trajectory. It outputs a PDB with a simplified trajectory visualizing its normal modes and a TSV file with various potential segmentations of the protein.

  • An object-oriented library that encapsulates the specific processing logic that the workflow applies.

  • A blender extension that visualizes the results.