Introduction
============

Protein Runway is designed to visualize the essential dynamics for trajectories of large molucules, such as proteins. It focuses on identifying key structural movements using normal mode analysis.

Key Features:

- Visualize molecular trajectories.
- Extract key movement patterns.
- Integrate with tools like `Chainsaw`, `Merizo`, `bio3D`.

Read the full details in the `paper (PDF) <https://raw.githubusercontent.com/AndrewRadev/protein-runway/994d3d357c0a4dbf8e499ebd5a117f12340f154d/docs/source/resources/paper.pdf>`_ or take a look at this illustrated overview:

.. image:: resources/poster_2000p.jpeg
  :width: 100%
  :alt: Poster for presentation purposes