segmentation.chainsaw
=====================

.. py:module:: segmentation.chainsaw

.. autoapi-nested-parse::

   Chainsaw predicts domain segmentation based on a deep learning model. It uses
   the ``stride`` tool to determine secondary structure, and produces a TSV file
   with a description of the output.

   Source: https://github.com/JudeWells/Chainsaw







Module Contents
---------------

.. py:class:: Parser(csv_path)

   Bases: :py:obj:`segmentation.SegmentationParser`


   The base class for all segmentation parsers.


   .. py:method:: parse() -> collections.abc.Iterator[Tuple[str, int, str]]

      The return value is a collection of items of the form::

          ("<method name>", <number of domains>, "<chopping>")

      They could be collected into a list or yield-ed. The
      :func:`write_segmentations` function only expects that this method
      returns an iterable object.



.. py:function:: _read_csv_rows(path, **kwargs)